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智造新闻 发表文章

基于华大智造测序平台已发表的文章

2018-12-03



序号

物种

物种大类

文献名称

期刊

影响因子

发表时间

产品

1

叶甲

动物

Comparative transcriptome analysis of chemosensory genes in two sister leaf beetles provides insights into chemosensory speciation.

Insect Biochemistry and Molecular Biology

3.756

201611

RNA-Seq

2

cPAS-based sequencing on the BGISEQ-500 to explore small non-coding RNAs

Clinical Epigenetics

4.987

201611

Small RNA

3

Establishment of a normal-derived estrogen receptor-positive cell line comparable to the prevailing human breast cancer subtype

Oncotarget

5.168

20171

RNA-Seq

4

Overexpression of placenta specific 8 is associated with malignant progression and poor prognosis of clear cell renal cell carcinoma

International Urology and Nephrology

1.564

20173

RNA-Seq

5

水稻

植物

Overexpression of OsHSP18.0-CI Enhances Resistance to Bacterial Leaf Streak in Rice

Rice

3.739

20174

RNA-Seq

6

克雷伯氏菌

细菌

Coordination of metabolic pathways: Enhanced carbon conservation in 1,3-propanediol production by coupling with optically pure lactate biosynthesis

Metabolic Engineering

8.142

20174

RNA-Seq

7

A reference human genome dataset of the BGISEQ-500 sequencer

GigaScience

6.871

20174

WGS

8

大花红景天

植物

Draft genome sequence of the Tibetan medicinal herb, Rhodiola crenulata

GigaScience

6.871

20175

RNA-Seq

9

果蝇

动物

Drug induces depression-like phenotypes and alters gene expression profiles in Drosophila

Brain Research Bulletin

3.033

20176

RNA-Seq

10

狗和狼

动物

Comparative performance of the BGISEQ-500 versus Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing

GigaScience

6.871

20176

WGS

11

Recessive mutation in EXOSC3 associates with mitochondrial dysfunction and pontocerebellar hypoplasia

Mitochondrion

3.704

20177

RNA-Seq

12

油菜

植物

Genome-scale mRNA transcriptomic insights into the responses of oilseed rape (Brassica napus L.) to varying boron availabilities

Plant and Soil

3.052

20177

RNA-Seq

13

小鼠

动物

Nuclear carbonic anhydrase 6B associates with PRMT5 to epigenetically promote IL-12 expression in innate response

PNAS

9.661

20177

RNA-Seq&ChIP-Seq

14

Methyltransferase SETD2-Mediated Methylation of STAT1 Is Critical for Interferon Antiviral Activity

Cell

30.41

20177

RNA-Seq

15

拟南芥

植物

AtACS8 plays a critical role in the early biosynthesis of ethylene elicited by copper ions in Arabidopsis

Journal of Cell Science

4.431

20178

RNA-Seq

16

The FOXN3-NEAT1-SIN3A repressor complex promotes progression of hormonally responsive breast cancer.

The Journal of Clinical Investigation

12.784

20178

ChIP-Seq

17

文昌鱼

动物

Transcriptome-wide analysis of immune-responsive microRNAs against poly (I:C) challenge in Branchiostoma belcheri by deep sequencing and bioinformatics

Oncotarget

5.168

20178

Small RNA

18

PBRM1 restricts the basal activity of innate immune system through repressing RIG-I-like receptor signaling and is a potential prognostic biomarker for colon cancer

The Journal of Pathology

6.894

20179

RNA-Seq

19

文昌鱼

动物

Exploring gene expression changes in the amphioxus gill after poly(I:C) challenge using digital expression profiling

Fish & Shellfish Immunology

3.148

20179

RNA-Seq

20

海参

动物

Genome-wide analysis of gene expression profile in the respiratory tree of sea cucumber (Apostichopus japonicus) in response to hypoxia conditions

Journal of the Marine Biological Association of the United Kingdom

1.038

20179

RNA-Seq

21

FH535 Inhibits Proliferation and Motility of Colon Cancer Cells by Targeting Wnt/β-catenin Signaling Pathway

Journal of Cancer

2.916

20179

RNA-Seq

22

小鼠

动物

"Data Descriptor: RNA sequencing analysis of activated macrophages treated with the anti-HIV ABX464 in intestinal inflammation"

Scientific Data

4.836

201710

RNA-Seq

23

小鼠

动物

Orally Administrated Bakers Yeast beta-Glucan Promotes Glucose and Lipid Homeostasis in the Livers of ob/ob Mice

Journal of Agricultural and Food Chemistry

3.154

201710

RNA-Seq

24

韭菜迟眼蕈蚊

动物

"Using Next-Generation Sequencing to Detect Differential Expression Genes in Bradysia odoriphaga after Exposure to Insecticides"

International Journal of Molecular Sciences

3.226

201711

RNA-Seq

25

鹿角杯形珊瑚

动物

Systemic response of the stony coral Pocillopora damicornis against acute cadmium stress

Aquatic Toxicology

4.129

201711

RNA-Seq

26

小鼠

动物

Characteristics of NK cells from leukemic microenvironment in MLL-AF9 induced acute myeloid leukemia

Molecular Immunology

3.236

201711

RNA-Seq

27

海参

动物

"Differential gene expression in the intestine of sea cucumber (Apostichopus japonicus) under low and high salinity conditions"

Comparative Biochemistry and Physiology D-Genomics & Proteomics

2.857

201711

RNA-Seq

28

人细胞系

Dual inhibition of DNMTs and EZH2 can overcome both intrinsic and acquired resistance of myeloma cells to IMiDs in a cereblonindependent manner

Molecular oncology

5.314

201711

RNA-seq

29

人白血病

Heterogeneous effects of M-CSF isoforms on the progression of MLL-AF9 leukemia

Immunology and cell biology

4.557

201711

RNA-seq

30

苎麻

植物

"Gene expression profiling of ramie roots during hydroponic induction and adaption to aquatic environment"

Genomics Data

2.801

201712

RNA-Seq

31

Direct inhibition of ACTN4 by ellagic acid limits breast cancer metastasis via regulation of β-catenin stabilization in cancer stem cells

Journal of Experimental & Clinical Cancer Research

5.189

201712

RNA-Seq

32

扩展青霉

真菌

"Identification of differentially expressed genes involved in spore germination of Penicillium expansum by comparative transcriptome and proteome approaches"

MicrobiologyOpen

2.747

201712

RNA-Seq

33

胰管腺癌

"High expression of diffuse panbronchiolitis critical region 1 gene promotes cell proliferation, migration and invasion in pancreatic ductal adenocarcinoma"

Biochemical and Biophysical Research Communications

2.466

201712

RNA-Seq

34

Probing impaired neurogenesis in human brain organoids exposed to alcohol

Integrative Biology

3.252

201712

RNA-Seq

35

Assessment of the cPAS-based BGISEQ-500 platform for metagenomic sequencing

GigaScience

6.871

201712

metagenome

36

盐生草

植物

Transcriptome sequencing and comparative analysis of differentially-expressed isoforms in the roots of Halogeton glomeratus under salt stress

Gene

2.415

201712

RNA-Seq

37

青鳉鱼

动物

"Transcriptomic analysis reveals transgenerational effect of hypoxia on the neural control of testicular functions"

Aquatic Toxicology

4.129

201712

RNA-Seq

38

小鼠

动物

Effects of In Utero PFOS Exposure on Transcriptome, Lipidome and Function of Mouse Testis

Environmental Science & Technology

6.198

20176

RNA-Seq

39

Germline and somatic variant identification using BGISEQ-500 and HiSeq X Ten whole genome sequencing

PLOS ONE

3.057

20181

WGS

40

螺和牡蛎

动物

Conserved and ubiquitous expression of piRNAs and PIWI genes in mollusks antedates the origin of somatic PIWI/piRNA expression to the root of bilaterians

bioRxiv

-

20181

Small RNA

41

High expression of diffuse panbronchiolitis critical region 1 gene promotes cell proliferation, migration and invasion in pancreatic ductal adenocarcinoma

Biochemical and Biophysical Research Communications

2.466

20181

RNA-Seq

42

拟南芥

植物

Phytochrome A Negatively Regulates the Shade Avoidance Response by Increasing Auxin/Indole Acidic Acid Protein Stability

Developmental Cell

9.174

20181

RNA-Seq

43

西瓜

植物

Comparative transcriptome analysis reveals key genes potentially related to soluble sugar and organic acid accumulation in watermelon

PLOS ONE

3.057

20181

RNA-Seq

44

青蒿

植物

A novel HD-ZIP IV/MIXTA complex promotes glandular trichome initiation and cuticle development in Artemisia annua

New Phytologist

7.33

20181

RNA-Seq

45

A novel mutation in PRPF31, causative of autosomal dominant retinitis pigmentosa, using the BGISEQ-500 sequencer

International journal of ophthalmology

1.1

20181

WES

46

大鼠

动物

Preinduction with bone morphogenetic protein-2 enhances cardiomyogenic differentiation of c-kit+ mesenchymal stem cells and repair of infarcted myocardium

International Journal of Cardiology

6.189

20181

RNA-seq

47

拟南芥

植物

The GARP/MYB-related grape transcription factor AQUILO improves cold tolerance and promotes the accumulation of raffinose family oligosaccharides

Journal of Experimental Botany

5.83

20181

RNA-seq

48

动物

"An integrated biomanufacturing platform for the large-scale expansion and neuronal differentiation of human pluripotent stem cell-derived neural progenitor cells"

Acta Biomaterialia

6.319

20181

RNA-seq

49

小鼠

动物

Cambogin suppresses dextran sulphate sodiuminduced colitis by enhancing Treg cell stability and function

British journal of pharmacology

5.49

20181

RNA-seq

50

人细胞系

FBXL10 contributes to the development of diffuse large B-cell lymphoma by epigenetically enhancing ERK1/2 signaling pathway

Cell death & disease

5.965

20181

RNA-seq

51

拟南芥

植物

Arabidopsis thaliana ACS8 plays a crucial role in the early biosynthesis of ethylene elicited by Cu2+ ions

JOURNAL OF CELL SCIENCE

4.431

20181

RNA-seq

52

小鼠

动物

Dual extra-retinal origins of microglia in the model of retinal microglia repopulation

Cell Discovery

-

20182

RNA-Seq

53

"Overcoming erlotinib resistance in EGFR mutation-positive lung adenocarcinomas through repression of phosphoglycerate dehydrogenase"

Theranostics

8.766

20182

RNA-Seq

54

豌豆蚜

动物

A small set of differentially expressed genes was associated with two color morphs in natural populations of the pea aphid Acyrthosiphon pisum

Gene

2.415

20182

RNA-Seq

55

"Selenite and methylseleninic acid epigenetically affects distinct gene sets in myeloid leukemia: A genome wide epigenetic analysis"

Free Radical Biology and Medicine

5.606

20182

RNA-Seq

56

小鼠

动物

"Repopulated microglia are solely derived from the proliferation of residual microglia after acute depletion"

Nature Neuroscience

17.839

20182

RNA-Seq

57

A novel affordable reagent for room temperature storage and transport of fecal samples for metagenomic analyses

Microbiome

8.496

20182

metagenome

58

番茄

植物

"Transcriptome resequencing analysis of the responses of Ty5-Mediated resistance to TYLCV via in resistant vs. susceptible tomato cultivars"

PeerJ

2.17

20182

转录组重测序

59

Efficacy and safety of faecal microbiota transplantation in patients with psoriatic arthritis: protocol for a 6-month, double-blind, randomised, placebo-controlled trial

BMJ OPEN

2.369

20182

metagenome

60

人细胞系

Autophagy mediates glucose starvation-induced glioblastoma cell quiescence and chemoresistance through coordinating cell metabolism, cell cycle, and survival

Cell death & disease

5.965

20182

RNA-seq

61

小鼠

动物

KRAB-type zinc-finger proteins PITA and PISA specifically regulate p53-dependent glycolysis and mitochondrial respiration

Cell research

15.606

20182

RNA-seq

62

小鼠

动物

"The LIS1/NDE1 Complex Is Essential for FGF Signaling by Regulating FGF Receptor Intracellular Trafficking"

Cell Reports

8.282

20183

RNA-Seq

63

A guide to sequence your favorite plant genomes

Applications in plant sciences

1.49

20183

综述

64

人胃癌

The lncRNA MACC1-AS1 promotes gastric cancer cell metabolic plasticity via AMPK/Lin28 mediated mRNA stability of MACC1

Molecular Cancer

6.204

20183

RNA-seq

65

根霉

真菌

Comparative genome-wide analysis of extracellular small RNAs from the mucormycosis pathogen Rhizopus delemar

Scientific Reports

4.259

20183

Small RNA

66

甲状腺癌

TBX3 promotes proliferation of papillary thyroid carcinoma cells through facilitating PRC2-mediated p57KIP2 repression

Oncogene

7.519

20183

RNA-seq

67

胃癌

Silkworm Pupa Protein Hydrolysate Induces Mitochondria-Dependent Apoptosis and S Phase Cell Cycle Arrest in Human Gastric Cancer SGC-7901 Cells

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

3.226

20183

RNA-seq

68

拟南芥

植物

Hydrogen peroxide positively regulates brassinosteroid signaling through oxidation of the BRASSINAZOLE-RESISTANT1 transcription factor

Nature Communications

12.124

20183

RNA-seq

69

人细胞系

Small molecules capable of activating DNA methylationrepressed genes targeted by the p38 mitogen-activated protein kinase pathway

Journal of Biological Chemistry

4.125

20183

RNA-seq

70

小鼠

动物

PAF-Myc-Controlled Cell Stemness Is Required for Intestinal Regeneration and Tumorigenesis

Developmental cell

9.174

20183

RNA-seq

71

白血病

Leukemia cell-derived microvesicles induce T cell exhaustion via miRNA delivery

OncoImmunology

7.719

20183

RNA-seq

72

酿酒酵母

真菌

RNA-Seq analysis of global transcriptomic changes suggests a roles for the MAPK pathway and carbon metabolism in cell wall maintenance in a Saccharomyces cerevisiae FKS1 mutant

Biochemical and Biophysical Research Communications

2.466

20184

转录组重测序

73

卡瓦胡椒

植物

The biosynthetic origin of psychoactive kavalactones in kava

bioRxiv

-

20184

转录组 de novo

74

李斯特菌

细菌

Identification and Characterization of als Genes Involved in D-Allose Metabolism in Lineage II Strain of Listeria monocytogenes

Frontiers in Microbiology

4.076

20184

RNA-seq

75

Cupriavidus 贪铜菌

细菌

In Situ Lignin Bioconversion Promotes Complete Carbohydrate Conversion of Rice Straw by Cupriavidus basilensis B-8

ACS Sustainable Chemistry & Engineering

5.95

20184

RNA-seq

76

大鼠

动物

Cranial Irradiation Induces Hypothalamic Injury and Late-Onset Metabolic Disturbances in Juvenile Female Rats

DEVELOPMENTAL NEUROSCIENCE

3.03

20184

RNA-seq

77

Anti?fbrogenic Potential of Mesenchymal Stromal Cells in Treating Fibrosis in Crohns Disease

Digestive Diseases and Sciences

2.875

20184

RNA-seq

78

IVD诊断测试

Quality Control of Next-generation Sequencing-based In vitro Diagnostic Test for Onco-relevant Mutations Using Multiplex Reference Materials in Plasma

Journal of Cancer

2.916

20184

综述

79

银屑病

"An Interleukin-25-Mediated Autoregulatory Circuit in Keratinocytes Plays a Pivotal Role in Psoriatic Skin Inflammation"

Immunity

22.845

20184

RNA-seq

80

人细胞系

Roles of the CSE1L-mediated nuclear import pathway in epigenetic silencing

PNAS

9.661

20184

RNA-seq

81

小麦根际菌

细菌

The Catabolite Repressor/Activator Cra Is a Bridge Connecting Carbon Metabolism and Host Colonization in the Plant Drought Resistance-Promoting Bacterium Pantoea alhagi LTYR-11Z

Applied and Environmental Microbiology

3.807

20184

RNA-seq

82

Single tube bead-based DNA co-barcoding for cost effective and accurate sequencing, haplotyping, and assembly

bioRxiv

-

20185

方法学-大片段

83

玉米象虫

动物

Transcriptome profiling reveals differential gene expression of detoxification enzymes in Sitophilus zeamais responding to terpinen-4-ol fumigation

2.59

20185

转录组 de novo

84

Identification of a mutL?homolog 1 mutation via whole?exome sequencing in a Chinese family with Gardner syndrome

Molecular Medicine Reports

1.692

20185

WES

85

大肠杆菌

细菌

Differential gene expression in Escherichia coli during aerosolization from liquid suspension

Applied Microbiology and Biotechnology

3.42

20185

RNA-seq

86

大鼠肠道

动物

A gene catalogue of the Sprague-Dawley rat gut metagenome

GigaScience

6.871

20185

metagenome

87

龙血树

植物

Complete plastome sequence of Dracaena cambodiana (Asparagaceae): a species considered Vulnerable in Southeast Asia

Mitochondrial DNA Part B

-

20185

质体DNA

88

人外泌体

Variants in EXOSC9 Disrupt the RNA Exosome and Result in Cerebellar Atrophy with Spinal Motor Neuronopathy

The American Journal of Human Genetics

9.025

20185

RNA-seq

89

牡蛎

动物

The Molecular Mechanism Underlying Pro-apoptotic Role of Hemocytes Specific Transcriptional Factor Lhx9 in Crassostrea hongkongensis

Frontiers in Physiology

4.134

20185

RNA-seq

90

拟南芥

植物

Overexpression of VaWRKY14 increases drought tolerance in Arabidopsis by modulating the expression of stress-related genes

Plant Cell Reports

2.869

20185

RNA-seq

91

盐芥

植物

Compositional and transcriptomic analysis associated with cuticle lipid production on rosette and inflorescence stem leaves in the extremophyte Thellungiella salsuginea

physiologia plantarum

3.3

20185

RNA-seq

92

酵母

真菌

Rapid pathway prototyping and engineering using in vitro and in vivo synthetic genome SCRaMbLE-in methods

Nature Communications

12.124

20185

酵母DNA

93

小鼠

动物

Global expression profiling and pathway analysis of mouse mammary tumor reveals strain and stage specific dysregulated pathways in breast cancer progression

Cell Cycle

3.53

20185

RNA-seq

94

STAG2 deficiency induces interferon responses via cGAS-STING pathway and restricts virus infection

Nature Communications

12.124

20185

RNA-seq

95

水稻

植物

DDM1 represses noncoding RNA expression and RNA-directed DNA methylation in heterochromatin

Plant Physiology

6.456

20185

Small RNA

96

恒河猴

动物

Genetic screening and multipotency in rhesus monkey haploid neural progenitor cells

Development

5.843

20185

RNA-seq

97

人唇裂

A novel PTCH1 mutation underlies nonsyndromic cleft lip and/or palate in a Han Chinese family

oral diseases

2.01

20186

WES

98

白背飞虱

动物

Comparative transcriptome analysis of Sogatella furcifera (Horváth) exposed to different insecticides

Scientific Reports

4.259

20186

转录组 de novo

99

感染性心内膜炎

Identification of pathogens in culture-negative infective endocarditis with metagenomic analysis

bioRxiv

-

20186

metagenome

100

Reliable Multiplex Sequencing with Rare Index Mis-Assignment on DNB-Based NGS Platform

bioRxiv

-

20186

方法学-index

101

人细胞

Bioengineered Noncoding RNAs Selectively Change Cellular miRNome Profiles for Cancer Therapy

Journal of Pharmacology and Experimental Therapeutics

3.867

20186

RNA-seq&miRNA

102

脐带血细胞

"Single-cell Transcriptomic Landscape of Nucleated Cells in Umbilical Cord Blood "

bioRxiv

-

20186

10X scRNA-seq

103

半滑舌鳎

动物

Transcriptome profiling of immune-responsive genes in the intestine of Cynoglossus semilaevis Günther challenged with Shewanella algae

Fish & Shellfish Immunology

3.148

20186

RNA-seq

104

番茄

植物

Expression of grape ACS1 in tomato decreases ethylene and alters the balance between auxin and ethylene during shoot and root formation

"Journal of Plant Physiology "

3.121

20186

RNA-seq

105

卵巢癌

"C/EBPβ enhances platinum resistance of ovarian cancer cells by reprogramming H3K79 methylation"

Nature Communications

12.124

20184

WES

106

分枝杆菌

细菌

Diagnosis of local hepatic tuberculosis through next-generation sequencing: Smarter, faster and better

Clinics and Research in Hepatology and Gastroenterology

2.623

20186

107

黄瓜

植物

Differential Gene Expression Caused by the F and M Loci Provides Insight Into Ethylene-Mediated Female Flower Differentiation in Cucumber

Front. Plant Sci.

3.678

20188

RNAref

108

自发性早产

Whole exome sequencing reveals HSPA1L as a genetic risk factor for spontaneous preterm birth

PLOS.Genetics

5.54

20187

WES

109

紫甘蓝、芥蓝

植物

Maintenance of grafting-induced epigenetic variations in the asexual progeny of Brassica oleracea and B. juncea chimera

Plant Journal

5.775

20188

Small RNA

110

The epigenetic modifier PBRM1 restricts the basal activity of the innate immune system by repressing retinoic acid-inducible gene-I-like receptor signalling and is a potential prognostic biomarker for colon cancer.

J Pathol

6.253

20181

RNA-seq

111

人细胞

Mutually exclusive acetylation and ubiquitylation of the splicing factor SRSF5 control tumor growth

Nature Communications

12.124

20186

RNA-Seq

112

人间质细胞

Differential and Interactive Effects of Substrate Topography and Chemistry on Human Mesenchymal Stem Cell Gene Expression

International Journal of Molecular Sciences.

3.687

20188

RNA-Seq

113

拟南芥

植物

Comparative performance of the BGISEQ-500 and Illumina HiSeq4000 sequencing platforms for transcriptome analysis in plants

Plant Methods

4.269

20188

转录组

114

水稻

植物

Modulating plant growthmetabolism coordination for sustainable agriculture

Nature

41.577

20188

RNA-Seq&ChIP-Seq

115

小鼠

动物

Menin Deficiency Leads to Depressive-like Behaviors in Mice by Modulating Astrocyte-Mediated Neuroinflammation

Neuron

14.318

20189

RNA-Seq


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